rs48938188 SNP Detail

Summary

• ID
  rs48938188
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145763363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCATAGATC AGTGTCTTGC TCAGTCATCA TCAGAGAAGC
  TTCCTCCTGC AGCAGGTGGG AACAAACGCA AAGACCCACC CTGGACAATG TGCAGAGTGT
  G
  AGGCTGTGGA ACACTCAGTT CTGAGTGAGA TTTCTCATTA AGTCCCAAGG AAGCGAGGTC
  TTCTACATAC AGCAGGGCTG ATACACGCGA GGAGTCATG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136041689	ENSMUSSNP5878393	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321009457	CHEV_3_145720572	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48938188					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145763363 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586914	regulatory region 586914			624 bp proximal
Rr586915	regulatory region 586915			748 bp proximal
Rr586916	regulatory region 586916			1231 bp proximal
Rr586917	regulatory region 586917			1742 bp proximal