rs48938798 SNP Detail

Summary

• ID
  rs48938798
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:10295709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G CTTCAGAGCC AACAGTTCCG TGGTTTCACA AGTCAGATGG
  TAAAATCACA ATTCTCAAGT ACTTTAGTGC TTGGAGATGC TCAGATCTCC TACCCAGTTA
  T
  GCTAGGCCCA GGACCTGGGC TTCAAAAGTC ATGCAGTGAG AGAACATTGT CAAAATACTA
  TCAATTGCCC CTACTAAAAC ACCAAACACC AAAGAAGTAG C                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MSM/Ms
ss147830296	ENSMUSSNP5874597	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	MSM/Ms
rs48938798					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:10295709 () rs orientation: forward

Symbol	Name	Function Class
Speer1c	spermatogenesis associated glutamate (E)-rich protein 1C	within coordinates