rs48938912 SNP Detail

Summary

• ID
  rs48938912
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55565983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCAAAGC ACTTTATTGA
  GTTTCTGTGC CCCCAGTGTC GGGGCACTAG CTTCACTGTG ACCCAGCATG CCACATTCAT
  CGTCCCATCC CAAGGAGCAC ACAAGGAGGG AAGGATAAAG CCTGGTTAGT TATGAAGCAA
  TATGCTTCTG GATCCAAGCC AGGTAGTTGG CCACGTCTGT GTAGACTCCG GGCTTGTTGC
  R
  GTCACCACAG CCGGAGCCCC AGCTGATGAC TCCGCGCAGG GTGAGCTGAT GTTCTGCAGT
  TCCTTCCTCA CACACCAGAG GGCCCCCGGA GTCACCCTGG GTGGGGAACA GGCAGCACGT
  GGTTCTTGCC TTATGCTTGA CAGGCAGGGA CCAAGGTACC TACCAGGACC CCAGGGCTGA
  CCTGGCAGGC ATCGGTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61806170	NES17743029	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48938912					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806170	NES17743029	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55565983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5669	CpG island 5669	60 bp proximal
Cpgi5670	CpG island 5670	1952 bp proximal
F12	coagulation factor XII (Hageman factor)	within coordinates
Rr480460	regulatory region 480460	292 bp proximal