rs48938953 SNP Detail

Summary

• ID
  rs48938953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46655577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC GAGAGCAGCG TGACCGACTC
  R
  GGCTCCCGTG CAGGGGGGAG GCGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148973606	ENSMUSSNP756372	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324333693	CHEV_13_46597470	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48938953					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46655577 () rs orientation: forward

Symbol	Name	Function Class
Cap2	cyclase associated actin cytoskeleton regulatory protein 2	within coordinates
Cpgi5539	CpG island 5539	within coordinates
Gm35110	predicted gene, 35110	176 bp upstream
Gm61509	predicted gene, 61509	794 bp upstream
Rr478915	regulatory region 478915	243 bp distal
Rr478916	regulatory region 478916	142 bp distal
Rr478917	regulatory region 478917	within coordinates
Rr478918	regulatory region 478918	304 bp proximal
Rr478919	regulatory region 478919	815 bp proximal
Tssr119597	transcription start site region 119597	216 bp downstream
Tssr119598	transcription start site region 119598	185 bp downstream
Tssr119599	transcription start site region 119599	53 bp downstream
Tssr119600	transcription start site region 119600	within coordinates
Tssr119601	transcription start site region 119601	12 bp upstream
Tssr119602	transcription start site region 119602	40 bp upstream
Tssr119603	transcription start site region 119603	788 bp upstream
Tssr122343	transcription start site region 122343	686 bp downstream