rs48939279 SNP Detail

Summary

• ID
  rs48939279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60057208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGTTCTA TTTTGTTGCT
  GATAAAGCCC CCTGCCCTAA TTTGCTGGTG ATAGTTAGGA GGTGTCAGAG TATAAACACA
  ATCAACTAGA GAAGGCAGAG TTATAAAGTC TGTGCTTGCC ATTACTTTAA AAGTTTGAAA
  AGTAAAAGAC CTGATGAAAG TTAACCACAA AATAATGCAA TTGATGGGGA AATATGTCTG
  R
  CACTTACAGT CAATTCAAAA GGTTTAGGCT AAATATACAT GCATGGAAAG ATTAATTCTA
  TTTTTCAAAG AAGAGTGCAT ATGGCATCTA ACTTATGAAA TAGATAAGCA TAATTTTCAC
  AGAAAAAGAT TTCAGATGTA ATAGTCATGA GCCATCATAT GTCGTAAATA TCAAACATGT
  AGTTAGCATA TACCAAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147991221	ENSMUSSNP5274725	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48939279					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60057208 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1458 bp upstream
Tssr4605	transcription start site region 4605	1845 bp downstream
Tssr134460	transcription start site region 134460	1527 bp downstream
Tssr134461	transcription start site region 134461	1668 bp downstream
Tssr134462	transcription start site region 134462	1755 bp downstream
Tssr134463	transcription start site region 134463	1815 bp downstream
Tssr134464	transcription start site region 134464	1909 bp downstream
Tssr134465	transcription start site region 134465	1963 bp downstream
Tssr134466	transcription start site region 134466	1976 bp downstream