rs48939288 SNP Detail

Summary

• ID
  rs48939288
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:27617595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTACTA AATCAAGTAT
  GACACAACAC CACAATCAAG AGGTAAAGTG AACATGAGAT GATGTATCAG GTTGCTGCTG
  ACACAGCAGG GCACACGTTG TACACAGAGC CGTGGCATGG GTAGCTATCA CGTGCAGTGA
  TGACATGACT GCATGCACAG CACTTTCACT GACAGTCCAG GTCTGTTTAT AACAGCCTCA
  K
  GACAAGCACT AGAGTGATGC ACCACAAACA CACACACACA CACACACACA CACACACACA
  CACACACACA CACACATCAC AGCTATGTCA TCAGGAGATC CAAAAGCTGC AGGTCCATTT
  TAATCCTACA GATCTGTAAC TGTACTATTT AAGAGATGAA CCTAACACTT TAAAAAATTA
  ATCTGGCCCA GTGGTGGCGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52540346	NES15611796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48939288					SNP	T	T	T	T	T	T	G	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52540346	NES15611796	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:27617595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Otulin	OTU deubiquitinase with linear linkage specificity			Intron
				Noncoding-Transcript-Variant
Rr500146	regulatory region 500146			1351 bp proximal
Tssr133864	transcription start site region 133864			1758 bp downstream