rs48939628 SNP Detail

Summary

• ID
  rs48939628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77921391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCCAGG CCTGTACCAT
  GGCACTGGAC TGGGAGGTCA TCTCAGGTTC ACCTTTTCCA GAGAGAGTCA GGCTACTAAT
  CAGATGTTCA CAGGTCAGAA CACTGAGTGT AGACGTAGCA TCTCTCCTCT CTGCCACCTA
  CTGACACACA TGTGACATAG CAGCACACCT GGAACACCTC TAGGGACAGA GAAACATTTG
  Y
  TTTTATTGGC ATCAAACTTG ATATTCTGGG ATGGTGCAAC ACTTTCTGTC TGTGTATAGT
  TAGCAATAAC TTACTATATA TTCCAAAACC AGTAGAAAAA AGAAGGGTTT TGTTCTATTT
  TGAGACAGGG TCTACCTATG CTGGCCTCAA ACTCATGATC CTCCTGTCTC TGCCTCCTAA
  GTTCTGGAAT TTAAAGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136663632	ENSMUSSNP788817	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48939628					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77921391 () rs orientation: forward

Symbol	Name	Function Class
Gm23609	predicted gene, 23609	11 bp upstream
Gm39375	predicted gene, 39375	909 bp upstream
Gm69108	predicted gene, 69108	186 bp upstream
Rr683457	regulatory region 683457	52 bp distal