rs48940346 SNP Detail

Summary

• ID
  rs48940346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:68108270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGAAGCT TAATAAATGA
  GAAATCATAG CTACTTTATT AAGTATCATC AGGAAAACAT TTTGAAAACC ATTCTAGGTA
  AAGATATAGA CATCCTGGTG AAATCAGAAT GTCTTTTCAG AGAGGCTGTA AGGTCTCCTG
  TACAAAATTC CTGGCACACT GAAATCTGTA CCTGTTAATT TTGGGTTAAG TGATCATGGA
  Y
  AATGGGATAT ATGTCCAGAA AATACCTAGC TAATACTGAA CACAGTATAT CATCTTACAT
  ATTTTGGGCA TTTAAGTCAT CCATCCCCTA ACCATTTGTA AGAATATACA TTAAGTCCTA
  AATATGAAGG AGACACAAAA ATATAGATCA CTGTATCGTA TAGCCTGCAC ATAAGTTATG
  TGCACATATC CATATATGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60417739	NES15921955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48940346					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417739	NES15921955	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68108270 () rs orientation: forward

Symbol	Name	Function Class
Iqschfp	Iqcj and Schip1 fusion protein	Intron
Rr577984	regulatory region 577984	378 bp proximal
Rr577985	regulatory region 577985	1209 bp proximal
Schip1	schwannomin interacting protein 1	Intron