rs48940592 SNP Detail

Summary

• ID
  rs48940592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85274254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTA CAGTTCATAT TGATCTTTGA
  Y
  TTGATGGATC TTATGTAAAG CTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss144799193	ENSMUSSNP4016605	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss324460053	CHEV_13_85265740	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48940592					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85274254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	564 bp proximal
Gm4076	predicted gene 4076	415 bp downstream
Rr388812	regulatory region 388812	878 bp upstream
Rr483357	regulatory region 483357	378 bp proximal
Tssr4134	transcription start site region 4134	713 bp upstream
Tssr120547	transcription start site region 120547	429 bp upstream
Tssr120548	transcription start site region 120548	555 bp upstream
Tssr120549	transcription start site region 120549	600 bp upstream
Tssr123349	transcription start site region 123349	495 bp downstream
Tssr123350	transcription start site region 123350	851 bp downstream
Tssr123351	transcription start site region 123351	952 bp downstream
Tssr123352	transcription start site region 123352	1258 bp downstream