rs48940713 SNP Detail

Summary

• ID
  rs48940713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135776518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTGTCAT TTCCTACAAA
  GTTGAGACAG CCTCTAGTGG GCTTTCAGGT GGCTGTCCTT ACCTAGATGG GATACTCTTC
  TGGAGGTTCC ATCTGCGATG GGCCACTTCC ATCTGCACCC ATGGGGCAGG CTGAGCACAA
  GCATTTGGAG GAGGGGCTAC CTCTGGATTC CTGTACTGGA TTCCTACCAT TGCTCATGGG
  Y
  ACACACAGGA GTGTCTGCCT TTCTCCCTAG GAAAAGCGTC GGGCAGAGCG GGCCGAGCAG
  CAGCGTATTC GCAATGAGCG GGAGAAGGAA AGGCAGAACC GCCTGGCTGT GAGTGACCCT
  AGCCCGGCCA CTGAGCCCTC GGTCCCATAT CTCTTCACAG ACATTGGTTC AAGTGGCAGC
  ATTTATCACA TCACATAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145548301	ENSMUSSNP518988	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48940713					SNP	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135776518 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	918 bp distal
Rr12645	regulatory region 12645	1883 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	1040 bp downstream
Tssr226	transcription start site region 226	770 bp upstream
Tssr227	transcription start site region 227	660 bp downstream
Tssr9015	transcription start site region 9015	1044 bp downstream
Tssr9016	transcription start site region 9016	792 bp downstream
Tssr9017	transcription start site region 9017	754 bp downstream
Tssr9018	transcription start site region 9018	736 bp downstream
Tssr9019	transcription start site region 9019	703 bp downstream
Tssr9020	transcription start site region 9020	25 bp upstream
Tssr9021	transcription start site region 9021	77 bp upstream
Tssr9022	transcription start site region 9022	563 bp upstream
Tssr9023	transcription start site region 9023	582 bp upstream
Tssr9024	transcription start site region 9024	676 bp upstream
Tssr9025	transcription start site region 9025	965 bp upstream
Tssr9026	transcription start site region 9026	1167 bp upstream
Tssr9027	transcription start site region 9027	1277 bp upstream
Tssr9028	transcription start site region 9028	1317 bp upstream
Tssr9029	transcription start site region 9029	1897 bp upstream
Tssr9030	transcription start site region 9030	1932 bp upstream
Tssr9031	transcription start site region 9031	1991 bp upstream
Tssr13890	transcription start site region 13890	1005 bp upstream
Tssr13891	transcription start site region 13891	760 bp upstream
Tssr13892	transcription start site region 13892	693 bp upstream
Tssr13893	transcription start site region 13893	676 bp upstream
Tssr13894	transcription start site region 13894	68 bp downstream
Tssr13895	transcription start site region 13895	78 bp downstream
Tssr13896	transcription start site region 13896	598 bp downstream
Tssr13897	transcription start site region 13897	669 bp downstream
Tssr13898	transcription start site region 13898	1957 bp downstream