rs48940735 SNP Detail

Summary

• ID
  rs48940735
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52741082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACAGAC ACAAACGCTG
  TCTAACTTGC CAAAAACTGT CAAGCGGCAG CTTTGGGTTG AGTTGGACAA CCTAGTTCAG
  CTTGTGCTAG CATAAACACA ATGAAACTAG TGGCCTGGTT TATGAAACAG CCTTTCATAA
  ACCAGGCCCC TGGCTCTTAC AATGATACTG GAGGATGCTT GTAGGTCAAC TCCTTCTGAA
  K
  CCAGATGTGG AAAACAAGCT ACATAAAGTC CATAGCACAT CCCTAAAACA CTATATGTTC
  TCAGTGTGCA GGTACTTATT GAAGCCAGAA GTCACAGACA AACATTTCAA CACCATCATG
  GACTTGCAAT GCTGTCTTGT AGAAAATTGT AATTGATATT TTAGCCTACA AGGTTTCCTT
  AGCAATCTTA TCTATGTTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60731921	NES16372434	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48940735					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60731921	NES16372434	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52741082 () rs orientation: forward

Symbol	Name	Function Class
Gm29670	predicted gene 29670	349 bp downstream
Mfsd6	major facilitator superfamily domain containing 6	within coordinates