rs48941228 SNP Detail

Summary

• ID
  rs48941228
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:71998953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACCATCCG TAATGAGATC
  TGACTCCCTC TTCTGGTGCA TCTGAAGACA GCTACAGTGT ACTTAGATAT AATAAATAAA
  TAAATCTTTA AAAAAATTTT ATTTTACGAC CAATGATATA AAGACAATCA TTACCTACAT
  TAAGAGGAAA TTTGGGGGCT AGGAGGAAAG AGAGATGAAG GAAATATCTA TACACACCAC
  R
  GAATGATTAA CGTTAGAAAT GACCATATAC ACATAACCGT AACTTAAGTC ACAGCAGCGA
  GAGCTGTTAA CCCAACTCTC CTTAGTAACA GCAAGCATGA GCTTACAGTC ATCCTTGACT
  ACATGAGACC TATCTCAAAA CAAAGAAAGC TTACCTCAAT GAAACACAAT CACTAATACT
  GGAAGGAAAG CATGACTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420203	NES16798281	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48941228					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420203	NES16798281	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:71998953 () rs orientation: forward

Symbol	Name	Function Class
Tcf12	transcription factor 12	within coordinates
Tssr90471	transcription start site region 90471	1384 bp upstream
Tssr90472	transcription start site region 90472	1273 bp upstream