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rs48941366 SNP Detail
Summary
  • ID
    rs48941366
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr13:68719148 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGGCT GAGCTGCAGC ATCTACGCAG
    Y
    CAGCACACAG GATGTTGGGC ATGTC                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
ss61831522 NES17768319 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T T T C T
ss144512351 ENSMUSSNP2491211 ENSEMBL ENSEMBL_Sanger f SNP T T
ss324395789 CHEV_13_68709906 CHEVERUD SCREENING_POP f SNP T T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs48941366 SNP T T T T T T T T T T T T T T T C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss61831522 NES17768319 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:68719148 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase within coordinates
Rr1653 regulatory region 1653 499 bp upstream
Rr388642 regulatory region 388642 1895 bp downstream
Rr482077 regulatory region 482077 1228 bp distal
Rr482078 regulatory region 482078 1810 bp proximal
Tg(Tek-cre)12Flv transgene insertion 12, Richard A Flavell within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory