rs48941593 SNP Detail

Summary

• ID
  rs48941593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60056952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCCTTTC ACTGAAAAAA
  ATAGAGGATC AAAGCACTAC TGCCATTGGA GAGAAATTCT TTAGCCACTC ATCAGTCAAC
  CTGTCCTCCA TGATTAATTC TTATTCTCCT TAATCTTTGA TGAGCAGTCA TGTACCTACA
  GTATCTTTTC AACTACAGAG GTGTGGGAAT CTCAACTCTT ACATTGCTAT GGCCCATGAT
  W
  ATTTATGAAG CACCATCAGA GGCTTCTGGC ATGATCTTTT TCTGTGGGTA TCTGGGATAG
  TTCTATTTTG TTGCTGATAA AGCCCCCTGC CCTAATTTGC TGGTGATAGT TAGGAGGTGT
  CAGAGTATAA ACACAATCAA CTAGAGAAGG CAGAGTTATA AAGTCTGTGC TTGCCATTAC
  TTTAAAAGTT TGAAAAGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52560015	NES15632553	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A	A	A	T	T	A	A	T
ss147991201	ENSMUSSNP3601386	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48941593					SNP	T	T	A	A	A	A	A	A	A	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52560015	NES15632553	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60056952 () rs orientation: forward

Symbol	Name	Function Class
Gm2682	predicted gene 2682	within coordinates
Gm41331	predicted gene, 41331	within coordinates
Rr390810	regulatory region 390810	1714 bp upstream
Tssr134460	transcription start site region 134460	1783 bp downstream
Tssr134461	transcription start site region 134461	1924 bp downstream