rs48942766 SNP Detail

Summary

• ID
  rs48942766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:109191287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAGACA AAAACCTTAA
  AATAGCCTCA GAAATCATGC CATGGATGAT TAAAGAGGAA AAAGATATAC CCTTAAAGAA
  ATCTATGGGC TTCCTCTTTC CAGACAGCGC TGAGCGCTGA GCATCTTTTG GGAAAACTGG
  CACAAGCGCC GCAAGACCGG CGGTAGGAGA AAACCCTACC ACAAGAAGCA GAAGTGTGAG
  Y
  TGGGACAGCC TGCTGCCAAC ATTAACATTG GACCTCAGTG CTTACACATA GTCCAACTTT
  GAGGAGGCGA TAAAAGTACT GTGCCCTGAG GTTGAATGTG GGGAACTTTT TCTGGGGCTC
  TGATTGTTGT ACTCGAAAAA CAAGAATCGT TGATGTTGTC TACAGTGCAT TCAATAATGA
  GCTTGCCTGC AGTAAGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60925379	NES16198698	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48942766					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60925379	NES16198698	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:109191287 () rs orientation: forward

Symbol	Name	Function Class
Gm32858	predicted gene, 32858	within coordinates
Gm53303	predicted gene, 53303	within coordinates