rs48943717 SNP Detail

Summary

• ID
  rs48943717
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45016135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCCATTCTTG GCTGCATACC TAGTTTAAGT CAACCTGGCC
  CACATGAGAC CCTATCTTAA AGGACGATGT GTGTGTGTGT ATGTGTGTGT GTGTGTGGGG
  K
  GGGGTGGGCT AGGGAAACGG CTTGGTAAAG TGCTTGCTGC TCAATCATGA GGAGCTTGGT
  TTAAGTCTTC AGAACCCATA AAAAGCTTTC AGCACGTCTA T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136405351	ENSMUSSNP4329555	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48943717					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45016135 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	894 bp distal
Rr677841	regulatory region 677841	882 bp proximal
Tssr84725	transcription start site region 84725	1953 bp downstream
Tssr84726	transcription start site region 84726	975 bp downstream
Tssr84727	transcription start site region 84727	944 bp downstream
Tssr84728	transcription start site region 84728	917 bp downstream