rs48943777 SNP Detail

Summary

• ID
  rs48943777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79212070 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCACATCTG GGTCCTTACA
  CAAATAAGGC TAAATGTTAG CTAAGAGAGC CACGCAGTTC ATCCCCCAGC CCTGCCCTGC
  TGCTTAAAAG CCTCTAAAGG TAATGTCCCA ACCCTGTATT CTTTATGACC GGAGAAGAAT
  CTGGGCATGT GGTCTACCTT GAGAAAGCTA AAAGTAGAGG TACCCCAAGG CGGCAGCAGG
  Y
  TCCACATCTA CTTCTGCAGC TGACTGCTGT CTCCTGGGGC GAAAGCCATC CCATTGGAAC
  TCGTGTGCAG ACAGAGCAAC ATAACCCTTT AGAAAATCTT CTGTCTAAAA AAACGAGCAC
  AGTGCTCATC TGTCGGTGAC TGTGGGCATG TGGGCATGTG CAGGTGAAGT CAGAGGACAA
  ACACGGGTGT CACCTGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
ss52474193	NES15653491	PERLEGEN	MM_PANEL2	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	NOD/ShiLtJ	PWD/PhJ
rs48943777					SNP	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52474193	NES15653491	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79212070 () rs orientation: forward

Symbol	Name	Function Class
Gm2225	predicted gene 2225	593 bp downstream
Rr186904	regulatory region 186904	531 bp proximal