rs48944005 SNP Detail

Summary

• ID
  rs48944005
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147978481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGTTGAC CTTCAACTCA
  GAGATCTGGC TGCCTCTGCC CCCCACATTC TGGGATTAAA GGCATATGCC ACCACTGCCT
  GGCTTGTTTG TGTTCTATTT AAAACTGAGC TGGCACAACT AGAGTTCATT ATATGATGGT
  TTTGGTAGCC TGACATAGTG GAAACTCAAT AGAAGTAGAA ACTATTTTAT AAACCTTATA
  W
  TATTTTTTAA TTTAGGTTGG TTCTTTCTAC ATTTTAATTT ACTTGTAATT CATTCTTTAT
  ACTCCATATT CCATTCCCAG CTCACCCTAT CCACCCTGCA AATGCTCCTC CACCTCCCAC
  ACCTCCTCCC CACCCCATTC TGTCTCCACT TGAATGCCCC CATCCCCCAG CACACCTGAC
  CTCTAAACTC CCTGGAGCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136057908	ENSMUSSNP4661007	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48944005					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147978481 () rs orientation: forward

Symbol	Name	Function Class
Rr375892	regulatory region 375892	1118 bp upstream
Rr587183	regulatory region 587183	379 bp distal
Rr587184	regulatory region 587184	77 bp distal