rs48944109 SNP Detail

Summary

• ID
  rs48944109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121503305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGATAACT CGGATACCCA TGGCTGCCTC CAGGGTTAGA
  AAGAAAGCAA AGTCGTCAGG AAAGGAACAG CCTAGCTCCT CAGCCTGGAA TCCTCCACAC
  R
  ACCGCTCCAA AGGAAGTAGA GATGAGATGC TTGGTGTGCA GAGAGCATAG ATCACCTTCT
  ACATCTGAGG GTTCTGCATG GGTCCAGACA ACGTCGCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135727210	ENSMUSSNP5317789	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss320905028	CHEV_3_121412574	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48944109					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121503305 () rs orientation: forward

Symbol	Name	Function Class
D3Mit288	DNA segment, Chr 3, Massachusetts Institute of Technology 288	817 bp distal
Gm43607	predicted gene 43607	1600 bp downstream
Gm43608	predicted gene 43608	within coordinates