rs48944282 SNP Detail

Summary

• ID
  rs48944282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172038148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCCATCC ATATGCTGTC GGCCTAGGTC ACGGCACAGG
  GAGGGGATGG AAGCGAACAT AACACAGAGC TGGACCTGCC ACACACACAC ACCCCGTAGC
  Y
  CCCCCTTACT GTACATTCCC TTCCTTGCAT CCTTCAGTGG TGAGAAAAAC TATCCCGGTG
  AAGATCGGCG TTAGAATGGT GATAGATGTG AGTGGGAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007452	PARCsnp_1.17804	PARC_SEQ	INBRED	f	SNP			C	T
ss120010361	PARCsnp_1.07448	PARC_SEQ	INBRED	f	SNP			C	T
ss146184011	ENSMUSSNP851976	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320123252	CHEV_1_174140712	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48944282					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172038148 () rs orientation: forward

Symbol	Name	Function Class
Casq1	calsequestrin 1	within coordinates
Gm17224	predicted gene 17224	within coordinates
Tssr10179	transcription start site region 10179	236 bp downstream
Tssr15168	transcription start site region 15168	455 bp upstream
Tssr15169	transcription start site region 15169	377 bp upstream
Tssr15170	transcription start site region 15170	355 bp upstream
Tssr15171	transcription start site region 15171	337 bp upstream
Tssr15172	transcription start site region 15172	256 bp upstream
Tssr15173	transcription start site region 15173	162 bp upstream
Tssr15174	transcription start site region 15174	108 bp upstream
Tssr15175	transcription start site region 15175	1402 bp downstream