rs48945201 SNP Detail

Summary

• ID
  rs48945201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93223977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATACAAAT GAAAGATATA
  AAACATGTGG TCCTAGTTCC ATTTCTGTCG CTGTGGTAAA AGCAACTTAC AGGAGAAAGG
  ATTTATTTTA GCTCATAGTT CCAGGTTGCA GTCCATCGTA GCAGGCAATC TAAAACTGTT
  AAGAAATAAA TCTGTTTTCC CTCTTGGCCA TTTATTTCCC AACAATAACA ACTCTGAGAC
  W
  AATTATTTAT TACTAAATGC CTAGGCCACA AGCTTTGGCT CGTCCCCTGA CTAGCTCGTA
  ACTTATTTAA CCATTTAAAC TATTCTATGC CTTCAACATG GTTAGTGACC TCTTTTCAGC
  TTCATGCATC CAAGCCCAGG CCAAATCTCC TCTTTATTCT ATCCTGAATT CAGCTAACCG
  CTGGTTTACG TCTGTCTCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss148843911	ENSMUSSNP2760739	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
ss321614314	CHEV_5_93505144	CHEVERUD	SCREENING_POP	f	SNP		A		T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs48945201					SNP	A	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93223977 () rs orientation: forward

Symbol	Name	Function Class
Gm71590	predicted gene, 71590	1056 bp downstream