rs48945301 SNP Detail

Summary

• ID
  rs48945301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122834224 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAATTGCT TATTCTAGTT
  CAACAATAGA AAAATCTAAA TGCCATAACT ACTGATGAAA TTTTTTAAAG ATTTATTTAT
  TTATTTATTA TATGTGAGTA CACTGTAGCT GTCTTCAGAC ACCCTAGAAG AGGGCGTCAG
  ATCTCATTAT GGAGGGTTGT GAGCCACCAT GTGGTTGCTG GGATTTGAAC TCAGGACCTT
  Y
  GGAGCTGCTG AGCCATTTCT CCAGCCCCCT GATGGAATTT TAACATATTA AGTATTAGAG
  CTCTCAGCTG GGCAGTGGTG GTACATGCCT TTAATTCCAG CACTTGGGAG GCAGGCAGGC
  AGATTTCTGA GTTCAAGGCC AGCCTGGTCT ACACAGTGAG TTTCAGGACA GCCAGGGCTA
  CAAAGAGAAA CCTTATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss149189790	ENSMUSSNP1769940	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321669479	CHEV_5_123146170	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48945301					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122834224 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	1041 bp downstream
Gm71244	predicted gene, 71244	1303 bp upstream
Rr378567	regulatory region 378567	1972 bp upstream
Rr619947	regulatory region 619947	310 bp distal
Rr619948	regulatory region 619948	1941 bp proximal