rs48947236 SNP Detail

Summary

• ID
  rs48947236
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148516304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTGCTT ATGTGATGGA
  ACTTTAATGT TTTAAGGAAC TGTGATCTTC CGGAATCTCC CTGAGACTGT TTGAATGCTA
  GAGCCTTTCT GCTATGGTGT CATGGCCCTG CTGGTCTTAA ATGGTGGCCA TTAATGCTGA
  AGACATAAAT TCTAGTTAGT CTTGGGTTTA CTTGTTATGG GCATTGTAAC CACTGTCCTC
  C
  ACTCTCCTGA GAAATATGCC ATTCCCTGCA TCTTCTGGGT CCTTGTTGGA TTATTTCATG
  GTAGTCTTTT CCCATACAGG CACCTGCTCT CCTTTGTTGG GTCAGTAACC ACTCACTTCT
  ACAGCGGGAG ACACAGGTTT TACTAAGATG AGCCACACCC TGGTTGCCTA GGGGCAGTCA
  CACCTATCCA CGCTTTTAGG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147930975	ENSMUSSNP4422197	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48947236					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148516304 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1316 bp distal
Gm75182	predicted gene, 75182	213 bp downstream
Nxt1	NTF2-related export protein 1	within coordinates
Rr397374	regulatory region 397374	1696 bp downstream
Rr566945	regulatory region 566945	1748 bp distal
Rr566946	regulatory region 566946	1878 bp distal
Rr566947	regulatory region 566947	537 bp distal
Tssr20647	transcription start site region 20647	1662 bp downstream