rs48947697 SNP Detail

Summary

• ID
  rs48947697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59037184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTTTTA TTAGTCATAG
  TCATTGTATG CTAGAGACAA GGAAATAGAT TGGGAGCCGG ATGGTTTCTC TGAGTACTAG
  TCTTGCCCTT TAATTAGACA AGTCACCTTG ACTCTGAAAC TTGCTAAACT CAGTTTCAGA
  TTGGTAAGAC AGAGACATAC AGAGATTTTT TTTTCCAGTG TCCCCTGCCT ATTCGGAACA
  Y
  CCAGTGACCT GACGATCTGA CAGCATGTGT TCCAAGTCTT AAAGGTGGAG GACAGTAACC
  TATGAGCTCA GTGCATGGAC CTGTTAACTA GAAATCCTCC CTGTCATATA AAATCATGAC
  ATGCTGTCAC AGTGTCTCTT GGCTCTTGTG CACATGACAT GAGCTAAAGG CAGAGAAGGG
  TCTTCTTTAT TTTTAGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60415192	NES15910258	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48947697					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415192	NES15910258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59037184 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr33381	transcription start site region 33381	768 bp downstream
Tssr33382	transcription start site region 33382	811 bp downstream
Tssr33383	transcription start site region 33383	847 bp downstream
Tssr33384	transcription start site region 33384	866 bp downstream
Tssr33385	transcription start site region 33385	883 bp downstream
Tssr33386	transcription start site region 33386	917 bp downstream
Tssr33387	transcription start site region 33387	987 bp downstream
Tssr33388	transcription start site region 33388	1299 bp downstream
Tssr33389	transcription start site region 33389	1320 bp downstream
Tssr33390	transcription start site region 33390	1359 bp downstream
Tssr33391	transcription start site region 33391	1464 bp downstream