rs48949165 SNP Detail

Summary

• ID
  rs48949165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26680604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTGAAAT ATCCATACCA
  AAAAGTATTC AGTGTTCACC CAAATTCAAA TTTGACTACA TAGCTTATTG TTTTCCTCAT
  TAAATCCCAG CTGTGAGAAA TTTCAAAAGT CACCTTTATT GCCAGTCCCA CACATGTATG
  GTCTATGGTT TTGGTATGGT CGCATGTAGT TGAGCCTGGA TTGGAACTAC ACTCCAACTC
  M
  TAAGTATTAG GATTGCAGGA GTATACTACC ATGCCAAGTT TCTGTGGTGC TGGTGATTGG
  ACAAAGGGCT TTTTATCTGC TAGGCAAGCA ATCTACCAGA TAAGATGTAT TCCCAGTGCA
  TCAACCCCCA TCGTGAAAAT CCCACTGAAA GAATTGCCAC ACAGACATGC AACATGAAAT
  CACTTATGTC TCCAGCTCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134696798	ENSMUSSNP7056340	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48949165					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26680604 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	144 bp upstream
Gm65182	predicted gene, 65182	within coordinates