rs48949423 SNP Detail

Summary

• ID
  rs48949423
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32188046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAACCTCA AACTGAAACC
  ACTTGTATGC GGGTTGTAGA TTATACACTT GGAACTTCAG GGCTAGTAGC ATCACACCGA
  ATTTGGCGCA TTTGTTGATT TGCCTGCCTT GCCTGCCCTA CCGATTCAGA ACCACACAGT
  CCCAGCAACC GCATTGCCAC TAGGCAGTAT CTAGTTTAGC ACTGAAGCCC ATCTAGTGAG
  Y
  CATTCCCTTG ACATCGCTTG GCGGAGGAAA TCCCACTGGT GATCACAGAG CGCTCTGTGG
  AAGCCAAGCA CGGCTTGCTC CTTGCCTACT TTTCCTGGAG TCCCACCATC TGGCGCTGCT
  ACAACGCATC ACCCTGGAGA AAATCTTAAC GAACTGCCTT CCCACAAAGA GCCACACGTA
  CCTCTCCTCC CAAAGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss63246542	NES17481724	PERLEGEN	MM_PANEL2	f	SNP	T	T		C	T	C
ss325792075	CHEV_19_32285136	CHEVERUD	SCREENING_POP	f	SNP			C				T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs48949423					SNP	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246542	NES17481724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32188046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	10 bp proximal
Gm50210	predicted gene, 50210	1373 bp upstream
Rr546425	regulatory region 546425	within coordinates
Rr546426	regulatory region 546426	357 bp proximal
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	502 bp upstream
Tssr158860	transcription start site region 158860	323 bp downstream
Tssr158861	transcription start site region 158861	370 bp downstream