rs48950432 SNP Detail

Summary

• ID
  rs48950432
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102839824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAACGGC TTCAAACTTT
  GCAGAAAGGA GCTGGTGCCA GCACTTTAAT TAACAGCCAT CTTGGCCTGT GAGCCTGAGC
  CACCGCCTTC TCCCTGGGCT CCTCCCCGGG GCTCTCCCGG CTCCGCCCTA GTCCCCTAGG
  TGACTAGCTC TACCCCTGGC CCTCAGCACC CCTTTACCAG AGGGATCAGG TCTGACCGAT
  A
  GAGAAAGTGC TGCACTGACG GCTTCTCTCC ATTTTAATTT GTAAAAATAA CTGCTCTAAG
  CTTTCTTCGT TCTCAAAAGC CGAATCCAAG ATTCTGGAAT TAAAGAATTA GGTGCCAATC
  CCACCTGGTG ATTTTTAGAT CAATAGCCTC GACTCCAAAC CTCCAGTGCC CTCCTCTGGA
  AAAAGGGTGG TTGTAGGGTA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132740437	ENSMUSSNP4303620	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48950432					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102839824 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3944	CpG island 3944	1804 bp distal
Cpgi3945	CpG island 3945	30 bp distal
Rr457458	regulatory region 457458	1820 bp distal
Rr457459	regulatory region 457459	1847 bp distal
Rr457460	regulatory region 457460	within coordinates