rs48950510 SNP Detail

Summary

• ID
  rs48950510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94523979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGGTGCA CGCTCTCAAC
  GAAGGGCCCA GTAACAGCGC CCAGTCAGGC ACAAGGAGGG GGTTCAACTG GTGTCACCTG
  GACAGGGGAC CAAGTATACT GTTCACTCCT AACAAGTGCT GAAGAGCACA CGGCAGACCC
  ATCTCCTTTG ACCTCAAGGT CACTTAGTAG GACCAGGGAG GAAGGTGCAG GTGAGGCGAT
  R
  GCACGGGTCT GAGATGCTTG CTCTAGGCGT GGGCGGGGCA AAGCTCTCAT CTTTCTGAGC
  ATCAGGTCTC AACCCTCCTG GGCTGTGGTT GCAAAACACA CTGTGCCATG GGCCACCCCA
  GCCAGATATG GGGGTCCCCG GAACGAGGGT CTTCGAAGGC TAGATGGGTA AGGATTTGGC
  GGCGACCAAC AGAAACATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60514128	NES16533874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48950510					SNP	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60514128	NES16533874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94523979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8506	CpG island 8506	1081 bp proximal
Gm41505	predicted gene, 41505	within coordinates
Gm41507	predicted gene, 41507	207 bp downstream
Rr1836	regulatory region 1836	34 bp proximal
Rr520192	regulatory region 520192	1048 bp distal
Rr520193	regulatory region 520193	within coordinates
Rr520194	regulatory region 520194	735 bp proximal
Rr520195	regulatory region 520195	1966 bp proximal
Tssr139566	transcription start site region 139566	1220 bp downstream
Tssr139567	transcription start site region 139567	1152 bp downstream
Tssr139568	transcription start site region 139568	1129 bp downstream
Tssr139569	transcription start site region 139569	1366 bp upstream