rs48951664 SNP Detail

Summary

• ID
  rs48951664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTAAGGCG GAGTGGGGTG GGGGATGGGT AGCGTGGAGA
  AGGACTTGAC CCCATCGTGA CCCTCCTTTG CTCCTCAGGT CTTCCCAAAG CCGACCCGGG
  Y
  CACTGGTGGG CCAGCTTCTT TTTCGGGAAA TCCACACTCC CGTTCATGAC TACAGTGTTG
  GAGTCTCCTG AGCGGTGAGT CCATCTTCCA TGTGGTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148398593	ENSMUSSNP1629924	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48951664					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829819 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	303 bp upstream
Cpgi12916	CpG island 12916	12 bp distal
Gm75115	predicted gene, 75115	313 bp upstream
Gm75119	predicted gene, 75119	1108 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	680 bp distal
Rr572940	regulatory region 572940	729 bp distal
Rr572941	regulatory region 572941	324 bp distal
Rr572942	regulatory region 572942	within coordinates
Rr572943	regulatory region 572943	618 bp proximal
Rr572944	regulatory region 572944	1119 bp proximal
Tssr22287	transcription start site region 22287	679 bp downstream
Tssr22288	transcription start site region 22288	607 bp downstream
Tssr22289	transcription start site region 22289	431 bp downstream
Tssr22290	transcription start site region 22290	408 bp downstream
Tssr22291	transcription start site region 22291	374 bp downstream
Tssr22292	transcription start site region 22292	218 bp downstream
Tssr22293	transcription start site region 22293	110 bp downstream