rs48951848 SNP Detail

Summary

• ID
  rs48951848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112574500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ACACAAACAT ATTTTTCATA GTTGTTTAAT ATTTTTATTT
  TATAGGTAAC AGCATCGAGA ATACTGCACT GTGTAAGTAC TTAGCACAAA GAACAGGCAC
  R
  TAATTCAGAG ACAATCAATA ATTACTGGAG GGCATATTAA TCTGATACTT ACAAGCTGTG
  GGTGCATGGC AGGGAAACGC TAACACGCTC TGTTTTCTGT A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145238571	ENSMUSSNP4425027	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48951848					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112574500 () rs orientation: forward

Symbol	Name	Function Class
Gm48876	predicted gene, 48876	within coordinates
Gm59881	predicted gene, 59881	1388 bp upstream
Gm59893	predicted gene, 59893	862 bp downstream
Rr369776	regulatory region 369776	1535 bp upstream
Rr395952	regulatory region 395952	231 bp upstream
Rr486370	regulatory region 486370	within coordinates
Rr486371	regulatory region 486371	67 bp proximal
Rr486372	regulatory region 486372	909 bp proximal
Rr486373	regulatory region 486373	1410 bp proximal
Tssr121117	transcription start site region 121117	182 bp upstream
Tssr121118	transcription start site region 121118	261 bp upstream
Tssr124051	transcription start site region 124051	73 bp downstream