rs48952202 SNP Detail

Summary

• ID
  rs48952202
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164710546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAA AAGCTCACTG GGAGGAAGGC
  C
  TTATTTACAT TTTCAGAGTA CAGTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148232452	ENSMUSSNP3749313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320606981	CHEV_2_164694126	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48952202					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164710546 () rs orientation: forward

Symbol	Name	Function Class
D2Mit227	DNA segment, Chr 2, Massachusetts Institute of Technology 227	848 bp proximal
D2Mit342	DNA segment, Chr 2, Massachusetts Institute of Technology 342	859 bp proximal
Gm75526	predicted gene, 75526	within coordinates
Rr40387	regulatory region 40387	1546 bp distal
Rr40388	regulatory region 40388	546 bp distal
Rr47627	regulatory region 47627	855 bp proximal
Rr374207	regulatory region 374207	172 bp downstream