rs48953850 SNP Detail

Summary

• ID
  rs48953850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:32524346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCTTAATTT CCATTTAAAG ACCATAGCTC CCAGCCAGCC
  AGATGGCCTG GTAGGTAAAG GCGCTTGCCA TCCTGAATCT AATACCTATA CCCACATACT
  R
  GGAGGAGAGA ATGAAGTCCT ACAAGCTCTC CTCGGCCACA CATTTAAAAG AAAAAAATAG
  TAAACAAAGT AATTAAAAAT AAAAGGTATC CAATTACCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148847961	ENSMUSSNP2079120	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48953850					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:32524346 () rs orientation: forward

Symbol	Name	Function Class
A730091E23Rik	RIKEN cDNA A730091E23 gene	within coordinates
Cpgi5422	CpG island 5422	1408 bp distal
Gmds	GDP-mannose 4, 6-dehydratase	1623 bp upstream
Rr369665	regulatory region 369665	1443 bp downstream
Rr476844	regulatory region 476844	1615 bp distal
Rr476845	regulatory region 476845	1133 bp distal
Tssr121995	transcription start site region 121995	1821 bp upstream
Tssr121996	transcription start site region 121996	1799 bp upstream
Tssr121997	transcription start site region 121997	1703 bp upstream