rs48954221 SNP Detail

Summary

• ID
  rs48954221
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11019516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAAAGT ACGTGGGTTA
  TTCACAACAC ATGCTTACTC TCATTCAAGG TCATTGTTGA CCTAGGAGAG CTAAGGAGAA
  CATACAATAC ATGCAGGCAA GCCAGATGAA TCAGTGGGTG AAAACCTGTG CTCAGTGCCA
  GGCCTAACAA CCAGAGCTCA AGCTCCAGGA CCAACATGGT AGGGAGAAAT GGCACTGACT
  K
  CCACATGCGT GCACCCAATA CTCCAGACAG ACAGACAAAC ACAAATAAAT GCTCTTTAAA
  AATATTTTTA GTTATTTGTT TTCATGTCAT TGTTTCTCTG TCTTAGAATA CGCTCTGAAG
  ATAGGGCTGG CCTCGAATTC AAGAGATCTG CCTGCCTCTG CCACTTCTGG CTCTAAAAGA
  GAAAATATTG GGCTAGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52593837	NES15688310	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48954221					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52593837	NES15688310	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11019516 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	1731 bp upstream
Cpgi7962	CpG island 7962	1153 bp proximal
Gm60496	predicted gene, 60496	1691 bp downstream
Rr404684	regulatory region 404684	1566 bp upstream
Rr511715	regulatory region 511715	527 bp proximal
Rr511716	regulatory region 511716	891 bp proximal
Rr511717	regulatory region 511717	1669 bp proximal
Rr511718	regulatory region 511718	1749 bp proximal
Rsl1d1	ribosomal L1 domain containing 1	within coordinates
Tssr137080	transcription start site region 137080	1723 bp upstream
Tssr140007	transcription start site region 140007	1268 bp upstream
Tssr140008	transcription start site region 140008	1607 bp downstream