rs48954341 SNP Detail

Summary

• ID
  rs48954341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126422220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtgtggcca aagaggacat tttagaagaa
  actgccctga aaatgaaaaa cgggccacat tagataaacc tagacagcca ggcttatgtc
  ataaatgtag gaagggaaaa cattgggcta atgagtgcag atcaacaaag gacatagaag
  K
  ccgaccatta caggcaggat atgatggcac taggccaaaa aacagacaac ggggcccacg
  tcaccagggc cctcaaatat atggggctct tcagaaagac cagaagaaac cttggccgtc
  tctccatcat cggagagacc acggagagct                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147721299	ENSMUSSNP3472050	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss323527337	CHEV_10_126023407	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48954341					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126422220 () rs orientation: forward

Symbol	Name	Function Class
Gm47965	predicted gene, 47965	339 bp downstream