rs48955459 SNP Detail

Summary

• ID
  rs48955459
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156767868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA ATAGAAGGGT GTTGTTTCTT
  A
  GGGTGCACCT AGGTGGCCTA CTTAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145809594	ENSMUSSNP1254872	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48955459					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156767868 () rs orientation: forward

Symbol	Name	Function Class
4930439D14Rik	RIKEN cDNA 4930439D14 gene	103 bp downstream
Cpgi904	CpG island 904	69 bp distal
Ralgps2	Ral GEF with PH domain and SH3 binding motif 2	672 bp upstream
Rr367037	regulatory region 367037	1299 bp downstream
Rr421285	regulatory region 421285	1491 bp distal
Rr421286	regulatory region 421286	1329 bp distal
Rr421287	regulatory region 421287	922 bp distal
Rr421288	regulatory region 421288	975 bp distal
Rr421289	regulatory region 421289	480 bp distal
Rr421290	regulatory region 421290	514 bp distal
Rr421291	regulatory region 421291	within coordinates
Rr421292	regulatory region 421292	503 bp proximal
Tssr9581	transcription start site region 9581	609 bp downstream
Tssr14475	transcription start site region 14475	1489 bp upstream
Tssr14476	transcription start site region 14476	1445 bp upstream
Tssr14477	transcription start site region 14477	749 bp upstream
Tssr14478	transcription start site region 14478	683 bp upstream
Tssr14479	transcription start site region 14479	641 bp upstream
Tssr14480	transcription start site region 14480	258 bp upstream