rs48958366 SNP Detail

Summary

• ID
  rs48958366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171486867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC ATTCAGACCT ACTCCCTTTC
  R
  GACTCCAATT AGAAAAGAAT AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001847	PARCsnp_1.15001	PARC_SEQ	INBRED	f	SNP		A	G
ss120004144	PARCsnp_1.04340	PARC_SEQ	INBRED	f	SNP		A	G
ss146171803	ENSMUSSNP1366704	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320120216	CHEV_1_173589430	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48958366					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171486867 () rs orientation: forward

Symbol	Name	Function Class
Gm70589	predicted gene, 70589	994 bp downstream
Rr423376	regulatory region 423376	333 bp distal
Rr423377	regulatory region 423377	371 bp distal