rs48959498 SNP Detail

Summary

• ID
  rs48959498
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:191474062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATGCAGG TGCTGAGAAT
  TGAAGTCAGG TCCTCTGGAA GAGCTGCCAG TGCTGCTAAC TGCTAGCCAC CTCTGCAGCC
  TGGGTTAATG AGTTACCTGC TGCTTTTCCA CAGCTGCCGT TGATGGGCAT ATTCATTTTT
  GTGTCGTGTT TGTCCGGGTG ACTTTTTACC TAAGGAAAGT ACAGTAGGGT CTGCCTGTAA
  Y
  CTGGAATGCT GAAAACGTGG TTGGTTAATA ATGATTCTAT CTTAGTTAGG GTTTCTATTG
  CTGTAATGAA TTAACATAAC CAAAACAGTA AAAGGGAGGG TAAGATTTAT TTGGCTTCTA
  CTTCCATATT GCTGTTCATC ACCAAAGGAA GTCAGAACCG AAACTCAAAC AGTTCAGGGA
  CCTGGAGGCA AGAGCTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360919	NES15859668	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48959498					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360919	NES15859668	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191474062 () rs orientation: forward

Symbol	Name	Function Class
Lpgat1	lysophosphatidylglycerol acyltransferase 1	within coordinates
Tssr10784	transcription start site region 10784	1165 bp upstream