rs48959501 SNP Detail

Summary

• ID
  rs48959501
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53764919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGTTGTG GTTTACTTAT
  ATTGTAGTAC CTGAATATAT TTATGTGCAT TATAAGTAGA TAGATATACA TGCACACACA
  ATATCAGTTC TTTTGTTTCT ATTCAGTGAT GGTGTTGATA CATTCTGAAA ATATTTCAAA
  CTTTTTCTAC ATTTTTAACT GAGAACATAG AGACAAATAG AGAATACACA AAGAAAAATT
  A
  TAATTTTCCC TCTTTCAACT GTGGCAAATG AGATGATTAG TAACATTTCC TGTTTTATGT
  TCCTGATCCT TCCTGATAAT TATCTTCTCC CAGTTGTCTG AGTGTAGACA TGTGCACACT
  TACATCTCTA CAAGTCCTTA CGTGAAGGCC AGGATCACTA GCCTTTCAAC ATGTCTGCTT
  TAGTATCATG TCATTTTTAA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss137758452	ENSMUSSNP5752757	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs48959501					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53764919 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr256685	regulatory region 256685	1682 bp proximal
Rr263732	regulatory region 263732	1769 bp proximal