rs48959510 SNP Detail

Summary

• ID
  rs48959510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51420791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGAGGGTC AGCAATTGGT CCAAGGTTAC ACAGCTGCTG
  GTTCAGGGTA GCTCCCTTCA CTCAGCTCGT GGCTAAACCT GCCAGTACTA TACCACTTGG
  R
  CCAAATTCTA TCCTAGAGGC AGCTGGCTCT TTTCACTCTG TAAATACAAA TACTGAAATG
  GCGGATCCTC TACCCCTCGG GCCCAGAGGC AGAATTGCTA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60886245	NES15973377	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48959510					SNP	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886245	NES15973377	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51420791 () rs orientation: forward

Symbol	Name	Function Class
Nfe2l3	nuclear factor, erythroid derived 2, like 3	within coordinates
Rr135769	regulatory region 135769	1191 bp distal
Rr135770	regulatory region 135770	191 bp distal
Rr149651	regulatory region 149651	592 bp distal
Rr379346	regulatory region 379346	742 bp downstream