rs48960019 SNP Detail

Summary

• ID
  rs48960019
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:11366774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTTGTGT CCTGACAGTT
  CTGGACAGGT TTCTCTGAGC AGCAGTCATG GTCCTACCTG CTCTCACAGG CTTGTCTGCA
  CTCCTGGGAG TCTAGCTCTC TTCCAGAGCC ACCTGGTTCT GGAGCCCAGT GGCAGAGGAC
  CTGCTCCAGG AACAGACAGA AACCAGAAGC TTCAATTCTT AATAATTAAA CTGTATATTT
  R
  TTTTTATTCC TCTTTTTCTA AATATATCAA CTGTTTTGCT TGTTCTCTTG GGTTTTAGAG
  TTGAATATTC AACCCCAGTT ATTCCAATAT TAATTAGTTT TTTATTTAGT TTTATTTTAT
  GACATATCTT GTTATGTAGC ATAGACTAGT CATGAACTCA ACATTCTCCT TTGTCCTACT
  AAGTGTTGGG ATTACAGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147852287	ENSMUSSNP4983503	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48960019					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11366774 () rs orientation: forward

Symbol	Name	Function Class
5830487K18Rik	RIKEN cDNA 5830487K18 gene	832 bp upstream
Snx29	sorting nexin 29	Intron