rs48960652 SNP Detail

Summary

• ID
  rs48960652
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70418536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGTGTGAAGG TTCTTGACTT CAACTTCAAC TTGCCAAAAC CATTGTCTTG
  Y
  GTAAACTATT GCACTGAGCT CGGTAGGAAT TAGAGAGGTA AGGAAGGTTT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132372376	ENSMUSSNP3700235	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss323735982	CHEV_11_70341212	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48960652					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70418536 () rs orientation: forward

Symbol	Name	Function Class
Psmb6	proteasome (prosome, macropain) subunit, beta type 6	within coordinates
Tssr102729	transcription start site region 102729	1779 bp downstream
Tssr102730	transcription start site region 102730	1735 bp downstream
Tssr102731	transcription start site region 102731	1676 bp downstream
Tssr102732	transcription start site region 102732	1204 bp upstream