rs48960973 SNP Detail

Summary

• ID
  rs48960973
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174314381 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGTCACTC AGGCCATCAT
  GCCATCACTG GGGTTCAGCC ACGACACCGT GAGTCTGTCA GGTATCAGTC AGGGCACTCC
  AGCCACCACA AGCCGTCGGG GTTCAGTCAG GTCCCGGTGA GTCTGTCAGG TATCAGTCAG
  GAAACTCCAG GATACCCTGG ATACGTCGGC GCTCAGGACA CCCCAAAACC CTGTGAAGCC
  C
  TCGGGCCTCG TGCTCTGTGA CCCCTGGAGT CACTTCCGGA TCAGGCTCGA CGGCCCGCTC
  TTGTCTTCCG TCAGTGGCGA CGGTGTGGGA GGAATTCCCA GGCCTGGGGA CAGGGAGCCC
  TAGCTCGGGT CGGGGTCGTG ACCTTGGCGA TCCCCCCGAG TCCCGAGCTC CGCTTGTCTC
  GCTACACCCG ACGCCAGGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148343921	ENSMUSSNP1820374	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48960973					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174314381 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	within coordinates
Gm38546	predicted gene, 38546	501 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	289 bp upstream
Rr572131	regulatory region 572131	1661 bp distal
Rr572132	regulatory region 572132	1272 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	14 bp proximal
Rr572135	regulatory region 572135	300 bp proximal
Rr572136	regulatory region 572136	409 bp proximal
Rr572137	regulatory region 572137	483 bp proximal
Rr572138	regulatory region 572138	608 bp proximal
Tssr28035	transcription start site region 28035	290 bp downstream
Tssr28036	transcription start site region 28036	361 bp downstream