rs48961885 SNP Detail

Summary

• ID
  rs48961885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74511421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGAGAAA GCCACACTTA
  GCTCAGTGAG CTGGTTCATC TGGCTGAGCT CCCAGGCAAT AGAGGTAAGG AGAAGATCCT
  CGCCCTCTGG ATCTGGGGCA CAAGTTGGGG GAGCATCGAA GGCCTTGGTG GGCAAGGTGA
  GTGAGGTCAG CTGAGGGAAG CCCACCTGGG TCAGCAGCTG CTGCACATGG CCAGCATGCA
  R
  CCGGACATTG TGTACTACCT CCAACTTTCT AAGGTTGCCT GGCCCAGCCA GGCCAAGAAC
  TTGTAGGAGC TGCCCAGGGC TCAGGCTGTC TGCCCGGAGT GAAGGGCAAC AGACCTGCAG
  AGGTGCTGGG CCTAATGGCT TCAGGGCCTG CACCACCATG TCAAAGTTGC CTTCTGTGAC
  AAAGAGGTCA GCAAAGACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61846850	NES17778966	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48961885					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846850	NES17778966	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74511421 () rs orientation: forward

Symbol	Name	Function Class
Ccdc127	coiled-coil domain containing 127	within coordinates
Lrrc14b	leucine rich repeat containing 14B	within coordinates
Rr482679	regulatory region 482679	693 bp proximal
Tssr123216	transcription start site region 123216	618 bp downstream
Tssr123217	transcription start site region 123217	635 bp downstream
Tssr123218	transcription start site region 123218	669 bp downstream
Tssr123219	transcription start site region 123219	691 bp downstream