rs48963220 SNP Detail

Summary

• ID
  rs48963220
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:23940409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTAATCCAA ATTATTATTT TGATTCCAAT TTCTTTGTCT
  AAACTTAAAC TCCCAGTAAC AATGCAGGGA CTTGCTTGTT TATGGTATTT TCAATACACA
  G
  AAAAGATCAT GCTTGTCTAT GACTGTTGGT ATCAGGACAT CTGAAACTCT GGATATCACA
  TAGGTGCGAC CCACACACCT GTTGCCAAGG CAACATCCAC C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146367614	ENSMUSSNP4814624	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48963220					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:23940409 () rs orientation: forward

Symbol	Name	Function Class
Hnmt	histamine N-methyltransferase	1003 bp upstream
Tssr22898	transcription start site region 22898	1551 bp upstream
Tssr22899	transcription start site region 22899	1529 bp upstream
Tssr22900	transcription start site region 22900	1017 bp upstream
Tssr22901	transcription start site region 22901	997 bp upstream
Tssr22902	transcription start site region 22902	978 bp upstream