rs48963401 SNP Detail

Summary

• ID
  rs48963401
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19489707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCAAAC CTGACAGTCA
  GCACTCACCA TTCACAAGAG AACCACAGAC AGGGAGATCA AACTTGGAAA GCAGCCTGTC
  TAAACCCATC AGTGCCCATA ACAAGTGAGT AAGTAGATGA CTTTAAAAGC CTGACTTATC
  TTTTATCATG TTTTCTTTGA TGATTAAAAA TAAGAGACAT ATGAATAAAT AAAAGTTTTT
  K
  GTTAATATAG GTTAGGTTCT ACCACTGTGC CACTCATTAA AGTCTATACT TGAATTGGTA
  ATTCACTATG ATGCTGTGAT GTCCCTGCAG TGACATACTA GTTGTAAATA TCACCATCTA
  TTCTGTAACA CCAAGACATT GAGATGTTTT TAAATTATTC ATGGCAGCTC ACATACTCAA
  AAGGAAAAGC ACTATAACAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148742772	ENSMUSSNP2156333	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
ss324277965	CHEV_13_19397406	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48963401					SNP	T	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19489707 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc2	T cell receptor gamma, constant 2	within coordinates
Tssr118532	transcription start site region 118532	364 bp downstream
Tssr121559	transcription start site region 121559	1148 bp upstream
Tssr121560	transcription start site region 121560	1086 bp upstream
Tssr121561	transcription start site region 121561	544 bp upstream
Tssr121562	transcription start site region 121562	624 bp downstream
Tssr121563	transcription start site region 121563	765 bp downstream
Tssr121564	transcription start site region 121564	1831 bp downstream