rs48963617 SNP Detail

Summary

• ID
  rs48963617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62246325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCTCTGC TCTCACGACC
  ATTCCCACGC AGTGTTCAGA TCTGCGACCG CGCCCTCCAG CTGGCCCGTA GGGCGGCCGC
  CCGCGCTCCT GCATTCTTGC ACTCAGGGTC TGGACAGGCA GCTCAGGTGT GCGCGTCCCG
  TTTACAATCA CTGAGCGCAC TCCGGGAAGG CAGGGGCGGG AACTCCTGGG CGCCTCGGTG
  Y
  GAGCTTCCCC GGCGTGCTGG GGCGGGGCGT AGCGCGGGGG CGGGGCCGGC GCCGCGGGCC
  TCTGCTGTCC CAGGCTGAGC GGTTGTCTCC GCGCTTTAGT AAGGACCCAG GCCACCCTCG
  GGGACAGGGA GTACTCCTTG GTCTGTGCCC CGGAAGGGTG AGCGCGCTGG AGACCGCATA
  CCGGGGACCG GGTGGACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60415940	NES15920342	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48963617					SNP	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415940	NES15920342	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62246325 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26	within coordinates
Cpgi13214	CpG island 13214	within coordinates
Rr77681	regulatory region 77681	within coordinates
Tssr29350	transcription start site region 29350	37 bp upstream
Tssr29351	transcription start site region 29351	120 bp upstream
Tssr29352	transcription start site region 29352	669 bp upstream
Tssr29353	transcription start site region 29353	1142 bp upstream