rs48963959 SNP Detail

Summary

• ID
  rs48963959
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487521 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATTGTGC CAGTCTTGAG
  ATGGTCTCCA ACCCAGGTCA CAACAGCAGC CCAGTCAGTG TCTAGCCATA CTGCCCTGCC
  AGCCAATGAC ATCTTGACTT CACCTGCCAT CTTATCCTTC CTAAATCCAC TTTCTTCCTT
  CTCCTCTCAG ACGACTCACA TTCCACAAAA CCACTTTATA CTTGTCAGCA TCCTCTCCCA
  R
  GAGAGCCAAT AGTCAAAGAT GAGTTTGTCT CCTTTCCGGC AGGAAAACTC ATTCTACATT
  CACCTGCCTA GCAAATAAGT CGTAGCAGCT TTCTAGTGCA CTGTGATGCC GGCTCACGCT
  GCCGTAAAAT ACTTTATGCC TAGTATTGTT TTTTTTTCTT CTTCTTCACA TAAACACAGT
  ACATTTTACC AACAAGACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080653	NES16590418	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48963959					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080653	NES16590418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487521 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	1157 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	166 bp upstream
Rr585191	regulatory region 585191	1725 bp distal
Rr585194	regulatory region 585194	254 bp proximal
Rr585195	regulatory region 585195	341 bp proximal
Rr585196	regulatory region 585196	869 bp proximal