rs48965263 SNP Detail

Summary

• ID
  rs48965263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20159504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATAGT TCATGCCTCA
  AACTGAGATA ATGAAATATT TGGACCTATT TTAATTGACC ATGCTATTTG AAAATGGTTT
  CTTCTAACAG CAGACAACCA GAAGACTAAT TCTCACATAA AGTAGTTGAC TTGGGAAGAG
  CATGAAAAGT CTCACCCACC TATTCATAAA TATATACCGA AGAAAACACA CTGTTATCCA
  Y
  ACATAGTTAT ATTTGCAAAC TATCTTATGC AACCCAAAGG TTCTGATTCC AATTAACACA
  GACTAATCCA CTCAACTGAT TTTCCCCAGG TATGGTGTCT CTATGCCTAT AATCACAGCT
  ACTCCAGAGG CTGAGGTGAG AGGAATTGAA TTAGGGAGTT CAAGGTTAGC CTGGGCAACA
  TAACAAGATT TACCTGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss134095014	ENSMUSSNP2727879	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48965263					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20159504 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22643	CpG island 22643	1081 bp distal
Rr690378	regulatory region 690378	968 bp distal
Slc9a7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	1458 bp upstream
Tssr163067	transcription start site region 163067	1490 bp upstream
Tssr163068	transcription start site region 163068	1431 bp upstream