rs48965431 SNP Detail

Summary

• ID
  rs48965431
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:88827720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGAAAAT GCTCTGTTGG
  GAGACTTCTT CATTCTCTTT CAACACTAAC CAAGGTAGCT GTGCTGAACA CAAAGGTAAT
  CTCACTTCTG ACCTAGTTCC TTATACAATG AATGTACAGA ATTCCACTGA AAAATAAAAC
  TACCCTGGCT TTTGTGTGAA TTTATTAGGA GGATTCATTA TCACACAAAA CCAAATGGGA
  K
  CTGAGACAAT TACAAAACAG TCAAAGCTCA TCATATGCTG TCAAAAACAG AATAATTCTG
  GCACTACTAG TTAAAGAAAG AGTAGTTGAC TTAAGTAATT TGATCAATGT AAATACATGA
  TGGTAAACTC ATTGTATAGT GCTGTACATA AAATATAATT CTAGTATTCA TTAAAGTATT
  GAATAATCAC CGTGCACTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148510949	ENSMUSSNP1801616	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48965431					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:88827720 () rs orientation: forward

Symbol	Name	Function Class
Krtap6-1	keratin associated protein 6-1	867 bp upstream