rs48966162 SNP Detail

Summary

• ID
  rs48966162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124141790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGACTTGG AGTGTTGGGT
  TAGGACCTTG ACCTGCATGC CACACACTCC GTGTTCTAGA GAGTGCAGCC CCAACAGAGG
  TGTCAGGGCT CCTCATGCCC ACTCAGCATT TATAGGACAC AAGAATGGTC CCCACTGTGA
  AGCCTGCCTT CTCCAGATGG AGCCAGCTTA CCAGGGTGCT TTGCAAATTG ATTTTCAGTG
  Y
  GTGAGGCTAA TGGAGCCAGC TGCCAGGTCG TCTGAATCAT GTTTTTACAG AACTTTAGAA
  CGTTTTTTTG TTTTGTTTTG TTTTGAGACA GGGTTTCTCT GTATAGCCCT GGCTGTCCTG
  GAACTCACTT TGTAGACCAG GCTGGCCTCA AACTCAGAAA TCCTCCTGTC TCTGCCTCCC
  CAGTGCTGGG ATTAAAGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835808	NES16017011	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48966162					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835808	NES16017011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124141790 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	921 bp upstream
Hip1r	huntingtin interacting protein 1 related	527 bp downstream
Rr620320	regulatory region 620320	71 bp distal
Rr620321	regulatory region 620321	502 bp proximal
Rr620322	regulatory region 620322	1914 bp proximal
Tssr48832	transcription start site region 48832	1261 bp upstream
Tssr53284	transcription start site region 53284	1890 bp downstream
Vps37b	vacuolar protein sorting 37B	914 bp downstream